miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|238155953|gb|GR023287.1|GR023287 AGAGAAAGGAAAATATCTTTAGAAGATAAACTAGTAGAGTACATAAACAACAATCCCATCACAGCAGCAGACTAATTTTT
CATTTCTTTTTTTCCTACTCCAGAAAATACCCCATTACAAAAAGAAAAAAAAAAGATATACCATTAAACAAAAGGAAGGG
AAACTATTTATCATCATAAAAGGGTAAACATAGTTGCGAGGGGATGGATTACATAATTTCATAAGCTTCCATTTTTCATC
TTCACTCGTCGTCGTCGTCATCATCATCATCGGCGCTGCCGTCCTCGTCATCATCGTCGTCTTCGTCATCGTTCACTTCC
GACCTTGACTTGTCGGACTCCTCTTCTGTGGGCCCATCGCTCAATTTTTTGTTGTAAGCCTGAAGGGTTTTTTCATACTC
GCCCTTTCGCTTCTCAGCCTTGGCTATGTAAGGAGCTTTTTCAGCTTCTGTGAGAGATTTCCACTTGTCACCACCAGCTT
TCCCAACAGCGGCGACTGATTTGTTGTTTGGGTGCTTCTCTTTGTACGTTTTCCTGAAGTCCTCCATGAAGACGAAG




Most similar to sp|P40619|HMGL_IPONI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
          Length = 144

 Score =  139 bits (351), Expect = 9e-33
 Identities = 70/83 (84%), Positives = 73/83 (87%), Gaps = 1/83 (1%)
 Frame = -2

Query: 556 FVFMEDFRKTYKEKHPNNKSVAAVGKAGGDKWKSLTEAEKAPYIAKAEKRKGEYEKTLQA 377
           FVFMEDFRKTYKEKHPNNKSVA VGKAGGDKWK LT AEKAP+I+KAEKRK EYEK LQA
Sbjct: 44  FVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQA 103

Query: 376 YNKKLSDGPT-EEESDKSRSEVN 311
           YNKK + G   EEESDKSRSEVN
Sbjct: 104 YNKKQAAGAAEEEESDKSRSEVN 126